Assignments
- Reading: Chapter 1 from Compeau and PevznerDue Sep 12, 2016 at 12pmNo Points Possible
- Reading: Chapter 2 from Compeau and Pevzner - part 1Due Sep 19, 2016 at 12pmNo Points Possible
- Rosalind: Finding patterns and skewsDue Sep 19, 2016 at 11pm10 Points Possible
- Expectation survey - Midterm 1Due Sep 29, 2016 at 11:59pmNo Points Possible
- Ethics readingsDue Oct 5, 2016 at 11pm1 Points Possible
- Reading: Genome assembly part1Due Oct 10, 2016 at 11pmNo Points Possible
- Exit ticket: assembly 2Due Oct 13, 2016 at 11pm1 Points Possible
- Rosalind: Assembly part 1Due Oct 21, 2016 at 11pm10 Points Possible
- Reading: Proteomics - Chapter 4 in Compeau and PevznerDue Oct 24, 2016 at 11pmNo Points Possible
- Rosalind: Assembly part 2Due Oct 28, 2016 at 11pm5 Points Possible
- Rosalind on proteomicsDue Nov 4, 2016 at 11pm5 Points Possible
- Reading: Sequence Alignment (Chapter 5)Due Nov 21, 2016 at 11pmNo Points Possible
- Reading: clusteringDue Dec 5, 2016 at 11pmNo Points Possible
- Rosalind: Longest common subsequenceDue Dec 12, 2016 at 10:59pm5 Points Possible
- Midterm 1 - in class90 Points Possible
- Peer evaluation midterm 1100 Points Possible
- Peer evaluation midterm 2100 Points Possible
- Midterm 2 in class90 Points Possible
- Class policiesNo Points Possible
- Final examDue Dec 19, 2016 at 1:30pm100 Points Possible
- Exit ticket: clusteringDue Dec 6, 2016 at 10pm1 Points Possible
- Reading quiz: clusteringDue Dec 5, 2016 at 11pm5 Points Possible
- Rate your team-mates - midterm 2Due Dec 1, 2016 at 11pm1 Points Possible
- Rosalind: Invert Burrows-Wheeler Transform ProblemClosedDue Nov 30, 2016 at 11pm1 Points Possible
- Exit ticket: Sequence AlignmentDue Nov 22, 2016 at 11pm1 Points Possible
- Reading quiz: sequence alignmentDue Nov 21, 2016 at 11pm6 Points Possible
- Midterm 2 - teamDue Nov 17, 2016 at 1:45pm10 Points Possible
- Exit ticket - Genome indexingClosedDue Nov 7, 2016 at 11:59pm1 Points Possible
- Reading: String indexing - Chapter 9 [volume 2]ClosedDue Oct 31, 2016 at 11pmNo Points Possible
- Reading quiz: String indexingClosedDue Oct 31, 2016 at 11pm5 Points Possible
- Reading Quiz: ProteomicsDue Oct 24, 2016 at 11pm6 Points Possible
- Rate your team-mates - midterm 1Due Oct 18, 2016 at 11pm1 Points Possible
- Exit ticket - Genome AssemblyDue Oct 13, 2016 at 10pm1 Points Possible
- Midterm 1 - teamDue Oct 11, 2016 at 1:45pm10 Points Possible
- Reading quiz: AssemblyDue Oct 10, 2016 at 11pm6 Points Possible
- Rosalind: Build a Motif-FinderClosedDue Oct 7, 2016 at 8pm10 Points Possible
- Exit Ticket: Motif Search-chapter 2ClosedDue Sep 29, 2016 at 3am1 Points Possible
- Reading: Chapter 2 from Compeau and Pevzner - part 2ClosedDue Sep 26, 2016 at 11pmNo Points Possible
- Reading Quiz: Compeau and Pevzner Chapter 2: part 2ClosedDue Sep 26, 2016 at 11pm5 Points Possible
- Exit Ticket: Median Motif Search, Greedy Motif SearchClosedDue Sep 26, 2016 at 10am1 Points Possible
- Exit Ticket: Motif Search (Introduction)ClosedDue Sep 22, 2016 at 3am1 Points Possible
- Reading Quiz: Compeau and Pevzner Chapter 2: part 1Due Sep 19, 2016 at 11pm5 Points Possible
- Exit ticket - Chapter 1ClosedDue Sep 14, 2016 at 11pm1 Points Possible
- Class expectations surveyClosedDue Sep 13, 2016 at 11pm1 Points Possible
- Reading: Z and KMP algorithms.Due Sep 13, 2016 at 12pmNo Points Possible
- Getting to know youDue Sep 12, 2016 at 11pm1 Points Possible
- Reading Quiz: Compeau and Pevzner Chapter 1Due Sep 12, 2016 at 11pm5 Points Possible
- Exit ticket - Z algorithmClosedDue Sep 8, 2016 at 12pm1 Points Possible
- Reading quiz: Introduction to biological sequencesClosedDue Sep 1, 2016 at 10am4 Points Possible
- Reading: introduction to biologyDue Aug 31, 2016 at 11:59pmNo Points Possible